* 艾伦脑图谱门户: [链接]
* Allen mouse brain 2d reference atlas: [链接]
* Allen mouse brain 3d viewer: [链接]
* Allen mouse brain connectivity database: [链接]
* Allen brain atlas API, documentation here [链接]
* Github fast download: [链接]
There are reviews on calcium imaging data analysis, one is Analysis pipelines for calcium imaging data by Eftychios A Pnevmatikakis, one of the main developers of CaImAn.
Here are several useful tools:
CaImAn, a python toolbox for large scale Calcium Imaging data Analysis and behavioral analysis, click here to access the github 链接; it's original paper is here, published on eLife on 2018. The paper can also be downloaded here.
CNMF_E, a MATLAB toolbox based on constrained non-negative matrix factorization (CNMF) approaches, which were proposed to simultaneously denoise, deconvolve, and demix calcium imaging data. The github 链接 is [here], detailed description can be found [here].
Suite2p for 2-photon calcium imaging, written in Python and MATLAB. Original paper can be viewed [here].
Here are several useful tools:
Decode, a python toolbox here: github 链接, original paper: [original paper]